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Machinist’s Mate 1st Class Kayla Matos receives a COVID-19 booster shot during a shot event in the hangar bay aboard USS Abraham Lincoln on Dec. 28, 2021, in San Diego. All active-duty military personnel are required to be vaccinated against the coronavirus.

Machinist’s Mate 1st Class Kayla Matos receives a COVID-19 booster shot during a shot event in the hangar bay aboard USS Abraham Lincoln on Dec. 28, 2021, in San Diego. All active-duty military personnel are required to be vaccinated against the coronavirus. (Lake Fultz/U.S. Navy/TNS)

SAN DIEGO (Tribune News Service) — A U.S. District Court judge in Texas issued a temporary injunction Monday in one of the ongoing federal lawsuits brought by service members challenging the Pentagon's coronavirus vaccine mandate, preventing the service from disciplining 35 sailors for refusing the vaccine.

The case, brought by religious-liberty-focused law firm the First Liberty Institute, includes 35 Naval Special Warfare sailors, several of whom are based in Southern California. San Diego is home to the Naval Special Warfare Command including several Navy SEAL teams, special warfare combat craft crewmen and explosive ordnance disposal technicians.

Mike Berry, general counsel for the First Liberty Institute, lauded the injunction in an emailed statement Monday.

"Forcing a service member to choose between their faith and serving their country is abhorrent to the Constitution and America's values," Berry said. "Punishing SEALs for simply asking for a religious accommodation is purely vindictive and punitive. We're pleased that the court has acted to protect our brave warriors before more damage is done to our national security."

The order prevents the Navy from applying its vaccine mandate and administrative discharge policy on the 35 sailors involved in the lawsuit. All active-duty service members are required to be fully vaccinated against COVID-19. Those who refused the vaccine face punishment including discharge from the military.

A Navy spokesperson, citing ongoing litigation, declined to comment on the ruling. It is unclear whether it will have any affect on other sailors facing separation.

As of Thursday, the Marine Corps had already booted 206 Marines for refusing the vaccine. The Navy is expected to begin doing the same, according to a Dec. 15 administrative message.

Both the Navy and Marine Corps received thousands of religious, medical and administrative waiver requests for the coronavirus vaccine. While the services approved both medical and administrative waivers, neither approved any of the religious requests.

The judge, Reed O'Connor, said in his order that the Navy's blanket denial of all religious waiver requests amounted to a violation of their rights under the First Amendment and the Religious Freedom Restoration Act.

"The Navy servicemembers in this case seek to vindicate the very freedoms they have sacrificed so much to protect," O'Connor wrote in the ruling. "The COVID-19 pandemic provides the government no license to abrogate those freedoms. There is no COVID-19 exception to the First Amendment. There is no military exclusion from our Constitution."

O'Connor goes on to write that the claims of the 35 sailors are "strong," noting that "secular" waivers, in the guise of medical waivers, were approved while religious ones were not.

"As a brief preview, the vaccine mandate fails strict scrutiny," the judge wrote. "The mandate treats comparable secular activity (e.g., medical exemptions) more favorably than religious activity."

The judge goes on to say that the loss of the sailors' "religious liberties outweighs any forthcoming harm to the Navy," and that although 80 service members have died from the virus, 99% of the Navy is vaccinated and that "COVID-19 treatments are becoming more effective and widely available."

O'Connor, who was appointed in 2007 by then-President George W. Bush, made news as the state government of Texas challenged Obama administration policies in court, striking several down. According to the Texas Tribune, that was no accident, as the state repeatedly filed cases in O'Connor's district.

Notably, O'Connor struck down the entirety of the Affordable Care Act in 2018 after Texas and several Republican-led states sued. That ruling was overturned by the U.S. Supreme Court in June.

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©2022 The San Diego Union-Tribune.

Visit sandiegouniontribune.com.

Distributed by Tribune Content Agency, LLC.

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